Scientists discover protein's starring role in genome stability, and possibly cancer prevention

January 28, 2016, Lawrence Berkeley National Laboratory
The scientists found that genome instability increases in cells as XPG levels decrease. The green spots mark locations of DNA double-strand breaks. The left image shows normal human cells and the right image shows XPG-depleted cells. Credit: Berkeley Lab

If you have a soft spot for unsung heroes, you'll love a DNA repair protein called XPG. Scientists from the U.S. Department of Energy's Lawrence Berkeley National Laboratory (Berkeley Lab) discovered that XPG plays a previously unknown and critical role helping to maintain genome stability in human cells. Their findings also raise the possibility that the protein helps prevent breast, ovarian, and other cancers associated with defective BRCA genes.

The research, which is published online Jan. 28, 2016 in the journal Molecular Cell, indicates XPG is essential to our health in ways far beyond it's been given credit for.

"We discovered a new function for an "old" repair protein that shows the protein is key to genome stability, and is probably important for suppressing breast and ovarian cancer," says Priscilla Cooper of Berkeley Lab's Biological Systems and Engineering Division. She conducted the research with Kelly Trego and several other Berkeley Lab researchers, and scientists from Colorado State University, Yale University, and Erasmus University Medical Center in the Netherlands.

Scientists have known for years that XPG helps carry out a DNA repair process that activates when only one of DNA's two strands is damaged. The process, called , removes DNA lesions caused by sun exposure, chemotherapy, and other sources.

Now, to their surprise, the Berkeley Lab scientists discovered XPG is also instrumental in a process called homologous recombination, which repairs breaks on both DNA strands in cells that are copying their genomes to get ready to divide. Double-strand breaks are especially perilous to an organism because they can lead to genome rearrangements in a cell.

The scientists learned that XPG interacts with at least five other cellular proteins, including BRCA1 and BRCA2, to carry out homologous recombination. Defects in genes that express BRCA1 and BRCA2 are known causes of breast, ovarian, pancreatic, and prostate cancer. Their new study shows that cells with reduced levels of XPG have a much higher prevalence of genome instability in the form of cell cycle defects, DNA double-strand breaks, chromosomal abnormalities, and other problems.

The first hint that XPG does something in addition to nucleotide excision repair came about two decades ago when scientists learned that particular mutations in the gene that codes for XPG cause an extremely rare and devastating premature aging disorder called Cockayne syndrome. Nucleotide excision repair is not implicated in Cockayne syndrome, so scientists knew XPG must play a role in another fundamental cellular process. What that function was, however, remained a big mystery.

"We've spent the past several years searching for this unknown function of XPG," says Trego.

To begin their search, the Berkeley Lab scientists reduced the expression of XPG in and studied what happened. These "knockdown" cells had a slew of problems associated with cell growth and cell cycle, as well as an increase in DNA double-strand breaks.

Next, the scientists set out to determine whether these problems are caused by a breakdown in the DNA replication process, in which two identical copies of DNA are made from one DNA molecule. They treated the cells with a chemical that causes replicative stress, and sure enough, the cells with reduced XPG levels were much more susceptible to the chemical.

This narrowed the search to homologous recombination repair, which is the most prevalent way of fixing broken replication forks. More research all but confirmed XPG's importance in homologous recombination repair: the scientists found that cells with reduced levels of XPG had a 50 percent loss in the repair process.

In a final step, the scientists mapped out mechanistically how XPG helps drive homologous recombination repair. Their results suggest that XPG swoops in during the initial stage of the process to clear chromatin of BRCA1, a protein that helps initiate repair. This step is thought to serve as a "reset button" for homologous recombination repair to allow the process to proceed. Almost nothing was known about this important step until now.

The scientists also found that XPG interacts with BRCA2 during a later stage in the process to load a protein called RAD51 onto DNA in need of repair. RAD51 is the "recombinase" protein that is essential for carrying out homologous recombination repair, but it needs help loading onto damaged DNA to perform its function.

"Until now, these direct interactions between XPG and BRCA1, BRCA2, and RAD51 during repair were unknown," says Cooper. "These interactions, and the greatly increased genome instability that occurs in XPG's absence, strongly suggest the protein is another important tumor-suppressor ."

Explore further: Ancient proteins involved in DNA repair could shed light on tumor development

Related Stories

Forks colliding: How DNA breaks during re-replication

June 4, 2015

Leveraging a novel system designed to examine the double-strand DNA breaks that occur as a consequence of gene amplification during DNA replication, Whitehead Institute scientists are bringing new clarity to the causes of ...

Enhanced DNA-repair mechanism can cause breast cancer

October 15, 2007

Although defects in the "breast cancer gene," BRCA1, have been known for years to increase the risk for breast cancer, exactly how it can lead to tumor growth has remained a mystery. In the October 15, 2007, issue of the ...

Recommended for you

Study shows city rats eat better than country rats

October 17, 2018

A pair of researchers, one with Trent University in Canada, the other the University of Manchester in the U.K. has found evidence that rats living in cities have a much richer diet than rats living in the country. In their ...

A curious branch of plankton evolution

October 17, 2018

Planktonic foraminifera (forams) - tiny, shelled organisms that float in the sea—left behind one of the most complete fossil records of evolutionary history in deep sea deposits. Consequently, evolutionists have a relatively ...

Regulating gene transcription using light

October 17, 2018

Researchers led by Mustafa Khammash have developed a new method that uses blue light to control the transcription of DNA into RNA in single cells. The technology could also be used in tissue engineering and stem cell research.

Climate changes require better adaptation to drought

October 17, 2018

Europe's future climate will be characterised by more frequent heat waves and more widespread drought. Heat and drought will both challenge crop production, but drought in particular will be a problem—especially for spring ...


Please sign in to add a comment. Registration is free, and takes less than a minute. Read more

Click here to reset your password.
Sign in to get notified via email when new comments are made.