Next-generation global e-infrastructure for taxon names registry

Nov 04, 2013
This shows two possible workflows for registration of taxonomic and nomenclatural acts, provided by the author or registry curator (A) and by publisher (B). Credit: Lyubomir Penev

The latest issue of ZooKeys - no. 346 - has been automatically registered in ZooBank on its day of publication last Friday. This marks the successful deployment of an automated registration-to-publication pipeline for taxonomic names for animals. The innovative workflow was jointly funded by the EU FP7 funded project pro-iBiosphere and a U.S. National Science Foundation project to develop the Global Names Architecture (DBI-1062441).

The process of post-publication recording and indexing of species has a long tradition, in some cases dating as far back as the middle of 19th century. But now in the 21st century with the advance of modern technologies and the opportunity to publish taxonomic novelties online, the process of post-publication recording brought into focus the concept of automated pre-publication registration.

Why is this important? The proportion of 'turbo-taxonomic' papers describing hundreds of increases. Registration of hundreds of new species is an issue, however it is even more important that the final publication data of the pre-registered names are reported back to ZooBank on the day of publication.

Launched as an open access peer reviewed journal in 2008, to coincide and adopt from inception the International Code of Zoological Nomenclature changes for electronic publications, ZooKeys was the first journal to provide a mandatory in-house registration in ZooBank. Since 2008, it has contributed about one third of all names currently registered in ZooBank. With the adoption of the automated ZooBank registration, ZooKeys continues its mission to set novel trends in biodiversity publishing.

This is the automated registration process and validation of finally published data and metadata between publisher and registry. Credit: Lyubomir Penev

Implementation of automated workflows and invention of XML-based tools will facilitate the process of publication and dissemination of biodiversity information. It will pave the way for unification and streamlining the registration process, even more to building the next-generation e-infrastructure for a common global taxon names registry. Within the pro-iBiosphere project and in cooperation with Plazi that have created the TaxPub XML schema, an automated registration workflow for plants has already been established between the International Plant Names Index (IPNI) and the PhytoKeys journal, to be applied soon also for fungi between Index Fungorum and the journal MycoKeys.

Explore further: Bodies at sea: Ocean oxygen levels may impact scavenger response

add to favorites email to friend print save as pdf

Related Stories

Zoologists are no longer restricted to publish new species on paper

Sep 04, 2012

In a highly debated decision, the rules for publication of scientific zoological names have changed to allow purely digital publications to meet the requirements of the stringent Code of Zoological Nomenclature. On 4th of September, the International Commis ...

Bringing botany into the 21st Century

Sep 14, 2011

Botanical taxonomy, which extends to include the formal scientific naming of all plants, algae and fungi has gone through a landmark change in the procedure scientists need to follow when they describe new species. Details ...

US state 1st with voter registration on Facebook

Jul 18, 2012

(AP) — The state of Washington has become the first in the U.S. to offer voter registration on Facebook, as states update their approaches for younger, more connected residents who've come to expect many services online.

Recommended for you

New feather findings get scientists in a flap

Oct 22, 2014

Scientists from the University of Southampton have revealed that feather shafts are made of a multi-layered fibrous composite material, much like carbon fibre, which allows the feather to bend and twist to ...

Lupin bread rises to the quality challenge

Oct 20, 2014

Sweet lupins are shaping up to be a viable and nutritious element in wheat breads and cereals with recent research suggesting certain varieties produce bread with desirable volume, texture and crumb cell ...

User comments : 0