Scientists simulate the intracellular environment of a luminescent bacteria cell

October 29, 2018, Siberian Federal University
A scheme of a bacterial cell with a fragment of a metabolic chain functioning inside it surrounded by glycerol or sucrose that imitate the intracellular environment. Credit: Oleg Sutormin.

A team from the Institute of Fundamental Biology and Biotechnology of SFU used glycerol and sucrose to simulate the intracellular environment of luminescent bacteria and carried out a number of enzymatic reactions. They hope to develop fragments of metabolic chains with different lengths and study fermentative reactions in conditions close to intracellular. The research was published in the Molecular Catalysis journal.

Hundreds of reactions involving enzymes constantly occur in . To study them in more detail, scientists try to create comprehensive experimental models of the intracellular environment. One interesting feature of such artificial environment models is the possibility to adjust their parameters to understand how a certain enzymatic reaction would react and the differences between enzyme reactions in a cell and those in tube conditions.

In order to understand how the viscosity of the reaction mixture affects the rate of enzymatic processes, a team from the Institute of Fundamental Biology and Biotechnology of SFU simulated the intracellular environment using two organic solvents—glycerol and sucrose. To test the effect of viscosity of the reaction mixture, the scientists used a fragment of a bioluminescent metabolic chain.

The work consisted of three stages. On the first stage, the biophysicists developed several artificial model systems made of glycerol and sucrose with different concentrations of components, but the same viscosity levels of reaction medium. On the second stage, they determined how the viscosity of the reaction mixture affected the speed of a enzymatic reaction in the coupled system of three enzymes: LDH, NAD(P)H:FMN-oxidoreductase, and luciferase. On the third stage, the researchers evaluated the thermal stability of the triple-enzyme system at the range of temperatures from 15 to 80 degrees.

As a result of the study, the scientists concluded that sucrose limited the mobility of the enzymes more efficiently than glycerol. Mobility limitation may lead to changes in the reaction rate or even mechanism. The researchers recommend further study of the increasing thermal stability of enzymes in viscous mixture environments and increasing temperature. They also propose an approach to construct the cellular multi-enzyme metabolic chains inside the luminous bacteria cell.

"Due to the huge number of enzymes reactions inside a real cell, for the process of metabolism to go on quickly and continuously within it, enzymes should have high cooperativity. Therefore, the more changing of the thermal stability of enzymes in the presence of viscogens, the better the cooperation of studied systems inside the real-cell conditions, and the greater the possibility that an artificial fragment of a metabolic chain would be natural for a bacterial cell. It is extremely important to study the influence of viscous organic solvents on the rate and of . The uniqueness of our study is that we use natural compounds—glycerol and sucrose that are actually found in the real cell, in contrast to crowding agents that are used in similar studies by other researchers," says Oleg Sutormin, a co-author of the study, and junior research associate of the Laboratory of Bioluminescent Biotechnologies of SFU.

Explore further: Artificial enzymes perform reactions on living cells

More information: Oleg S. Sutormin et al, Effect of viscosity on efficiency of enzyme catalysis of bacterial luciferase coupled with lactate dehydrogenase and NAD(P)H:FMN-Oxidoreductase, Molecular Catalysis (2018). DOI: 10.1016/j.mcat.2018.08.012

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