Tropical diversity takes root in relationships between fungi and seeds

October 2, 2017, Smithsonian Tropical Research Institute
Examples of fungi isolated from seeds in a burial experiment at Barro Colorado Island in Panama. Credit: Carolina Sarmiento/STRI

A team led by Smithsonian scientists in Panama exposed a key to understanding tropical tree diversity by studying how fungi interact with seeds that linger in the ground. Despite a smorgasbord of species available to choose from, tropical fungi and seeds are picky about associating with one another. Early pairings with a particular fungus may influence whether a seed survives and also may help explain how tropical forests remain so diverse.

"Depending on the species of the seed it pairs with, a fungus might kill the seed, hamper its development or, on the contrary, aid its germination," said Carolina Sarmiento, Smithsonian Tropical Research Institute fellow and lead author of the new study, published in the Proceedings of the National Academy of Sciences. These species-specific outcomes are surprising because many of the fungi isolated in the study can colonize various , each with its own chemical and physical seed defenses. "We don't know yet why fungi behave differently depending on the seed species they infect, but these responses are crucial to understanding their survival and growth in tropical forests."

To demystify how fungi interact with tropical seeds, Sarmiento and her colleagues buried thousands of seeds from nine in a variety of forest plots on Barro Colorado Island in Panama. They dug up the seeds after periods underground ranging from a month to a year. After sterilizing the outer surfaces, they cut the seeds in half. They placed one half in a culture tube to isolate any fungi that might have invaded the seed tissue and processed the other half to see if the tiny plant embryo was still alive.

Researcher Carolina Sarmiento checks on seeds inoculated with fungi to learn how the fungi impact germination. Credit: Geetha Iyer/STRI

The team processed more than 8,300 seeds and isolated 1,460 fungi, identifying more than 200 distinct fungal strains. Each of the nine plant species attracted a distinct community of fungi, despite different amounts of time underground, varying soil types, and even different forest surroundings. The filtering effect of plant species—even as a seed—upon the types of fungi that it attracts provides important insights into the elusive mystery of how tropical diversity persists.

In the tropics, numerous species grow in close proximity but any individual species is widely scattered and locally rare. Scientists hypothesize that this pattern of diversity might be maintained by specialized pathogens, pests or predators of a host species, which make the local neighborhood hostile to more of its own kind while favoring the growth of unrelated species.

"As the density of individuals of a single species increases, diseases are more likely to spread from one individual to another," explained senior author A. Elizabeth Arnold, professor at the University of Arizona. "Most work in this area has focused on seedlings and saplings of tropical trees, but what happens to seeds is less well known."

Smithsonian postdoctoral fellow Paul-Camilo Zalamea recovers seeds buried in the forest of Barro Colorado Island, Panama, to study the fungi that might have colonized them. Credit: Rodrigo Arangua/AFP

Following up on their results, the researchers inoculated fresh seeds from seven study species with fungal strains isolated during the burial experiment. They germinated the new seeds in a greenhouse, and confirmed that the fungi affected mortality and germination in a species-specific manner.

"One fascinating result was that if a fungus had a pathogenic effect on one plant species, it was likely to have the opposite effect on another," said coauthor Paul-Camilo Zalamea, a Smithsonian postdoctoral fellow.

Project investigator James Dalling, professor at the University of Illinois, Urbana-Champaign, said, "By beneficially affecting some while keeping others from regenerating, may be the ultimate arbiters of the struggle for existence in ."

Explore further: Development of an artificial orchid cultivation kit

More information: Carolina Sarmiento el al., "Soilborne fungi have host affinity and host-specific effects on seed germination and survival in a lowland tropical forest," PNAS (2017). www.pnas.org/cgi/doi/10.1073/pnas.1706324114

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