Fuel cells in bacteria

++**Fuel cells in bacteria
The nitrogen cycle (left) and how anammox bacteria facilitate the conversion of nitrite to nitrogen gas (right). Credit: MPI for Medical Research

The exchange of nitrogen between the atmosphere and organic matter is crucial for life on Earth because nitrogen is a major component of essential molecules such as proteins and DNA. One major route for this exchange, discovered only in the 1990s, is the anammox pathway found in certain bacteria. It proceeds via hydrazine, a highly reactive substance used by humans as a rocket fuel. Researchers at the Max Planck Institute for Medical Research, in cooperation with scientists from the Max Planck Institute for Biophysics and Radboud University in the Netherlands, now describe the structure of the enzyme performing the last step in this process: turning hydrazine into nitrogen gas and harvesting the energy set free in this way. The results, which were just published in Science Advances, show an unprecedented network of heme groups for handling the large number of electrons released during the chemical conversion.

The biogeochemical nitrogen cycle

Nitrogen, in the form of (N2), makes up about 80 percent of our atmosphere, but as an element nitrogen occurs only in small quantities in the Earth's crust. However, all living organisms require nitrogen, because it is part of most of their essential molecules. However, they cannot use atmospheric nitrogen directly and require it in a different chemical form. A number of perform such conversions and contribute to the biochemical nitrogen cycle (image) by producing more reactive forms of nitrogen.

Anammox Bacteria – a shortcut through the middle

In the 1990s, scientists discovered a bacterial process called anaerobic ammonium oxidation (anammox). "We now believe this process is responsible for 30 to 70 percent of the yearly nitrogen removal from the oceans," explains Thomas Barends, at the MPI for Medical Research in Heidelberg. "Due to this characteristic, are used in sustainable wastewater treatment all over the world," Cornelia Welte of Radboud University adds. During this process, bacteria convert nitrites and ammonia into dinitrogen (N2) and water, while generating energy for the cell. The molecule is produced in an intermediate step. Hydrazine is a common component of , but its use by bacteria as a metabolic fuel is rather exotic—and surprising in living organisms because of its high toxicity. Welte: "So far, hydrazine has only been found in anammox and not in other bacteria." Until recently, little was known about how these bacteria harness the energy released during the hydrazine conversion.

Previously the research group and their collaborators have described the structures of the enzymes hydrazine synthase and hydroxylamine oxidoreductase. The researchers now further unravel the anammox puzzle by describing the crystal structure of hydrazine dehydrogenase, the enzyme involved in the conversion of toxic hydrazine to harmless gas. "Both the use of hydrazine as well as the structure of hydrazine dehydrogenase are quite unique, making it important to uncover the biological process in detail," Welte explains.

From toxic rocket fuel to harmless nitrogen – the hydrazine dehydrogenase (HDH) complex

"One could compare the HDH complex to a fuel cell with electrical outlets that only fit certain types of plugs," says Thomas Barends, describing the structure and mechanism of HDH. The 'fuel' hydrazine enters the protein complex through a channel on the outside. The enzyme then catalyzes the conversion of hydrazine into gas through an unprecedentedly large network of 192 heme groups. Then the electrons are carried to other parts of the bacterium, like the transfer of current to electrical consumers. These consumers then generate the cell's energy.

Closing the gap

"We are now working on finding the protein that takes up the electrons stored in the heme network," says Mohd Akram, postdoc in the Barends group and first author of the paper. From the structure they observed they expect that only small proteins can enter the complex, take up the electrons in a hollow space inside, and leave again. Selecting which proteins can access the electrons may help ensure the electrons are brought to the right place to be used for energy generation in the cell.

Explore further

Anammox synthesizes 'rocket fuel' hydrazine with special protein

More information: M. Akram et al. A 192-heme electron transfer network in the hydrazine dehydrogenase complex, Science Advances (2019). DOI: 10.1126/sciadv.aav4310
Journal information: Science Advances

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Citation: Fuel cells in bacteria (2019, April 19) retrieved 19 May 2019 from https://phys.org/news/2019-04-fuel-cells-bacteria.html
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Apr 19, 2019
So this helps explain how the bacteria in my fish tank cycle the waste.

But, is the idea to harvest energy from nitrogen fixing bacteria by isolating and removing the hydrazine gas?

Apr 20, 2019
"the enzyme involved in the conversion of toxic hydrazine to harmless dinitrogen gas."

Not surprising that evolution tinkered with heme in such a process, since NO is the oxygen OO forerunner in the early atmosphere (produced by volcanoes) and needed to be detoxified. Re how eukaryotes later evolved heme into O2 (and CO/CO2) carriers in blood (by way of the bacterial mitochondrion metabolism) - heme is a very early evolved protein group [ https://en.wikipe...iki/Heme ].

But of course, once you had nucleotides used for early metabolic (and genetic) functions such as in the key coenzyme A, it is a rather tinkerish way to stumble on use for them like that [ https://en.wikipe...enzyme_A ].

Apr 20, 2019

But, is the idea to harvest energy from nitrogen fixing bacteria by isolating and removing the hydrazine gas?

Apparently not (at least not in an efiicient manner. See last paragraph)

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