Radiotherapy: Repairing proteins in search of the ring to protect DNA

October 9, 2018, CNRS
Radiotherapy: repairing proteins in search of the ring to protect DNA
Figure 1: Three levels of analysis of the recruitment of repair proteins on DNA breaks (Ku in purple and XLF in green. APLF is not shown for the purposes of clarity). From left to right: (1) accumulation of protein as a spot at the irradiation site in a cell nucleus; (2) protein aggregates visualized under super-resolution microscopy; (3) molecular complex characterized by X-ray crystallography. The area of interaction between Ku and XLF is shown in yellow. The DNA in brown is surrounded by the Ku ring. Credit: P Calsou / JB Charbonnier

To understand why some cancer cells resist radiotherapy, an international team of researchers has used crystallography to "photograph" the first moments of the molecular ballet that allows these cells to repair their DNA. The study involved teams from the CEA, CNRS, PROXIMA-1 beamline at SOLEIL, University of Paris-Sud, Gustave Roussy, Aix-Marseille University and University Paul Sabatier—Toulouse III. It was published in Nature Structural & Molecular Biology.

Radiotherapy is a critical tool in cancer treatment. Prescribed in one in two cases (i.e. 200,000 cases per year in France), the rays used in destroy by fragmenting their DNA. However, in tumours, some cells can resist treatment by repairing the breaks in their DNA. To increase the effectiveness of radiotherapy on the tumour, for instance by inhibiting DNA repair in the tumour, researchers first need to have a detailed understanding of how these repair mechanisms work.

In irradiated cells, a assembles around a ring-shaped protein known as Ku, which quickly encircles the ends of DNA breaks. Through this ballet, the ends of breaks are repaired by joining together.

Researchers studied the first phase of this dance, with Ku at the centre, and particularly the involvement of APLF and XLF, two proteins that work with Ku. Using X-ray crystallography to view the protein complexes at an atomic scale, they produced snapshots of interactions between Ku/APLF and between Ku/XLF. For the first time ever, these images show that each of the two partners comes into contact with Ku on distinct sites. Researchers showed that if these sites are changed, breaks are no longer properly repaired and the cells much less survive after they are irradiated.

In the long term, precise knowledge of the contact points between the DNA break repair catalysts could lead to the development of molecules that would perfectly adjust to these sites. By preventing the assembly of the repair mechanism in tumours, these molecules could potentiate radiotherapy treatments.

Radiotherapy: repairing proteins in search of the ring to protect DNA
Figure 2: Cells containing the XLF protein marked in green (left) are irradiated by laser to create DNA breaks along thin lines. The proteins are recruited in one minute on the parallel lines drawn by the laser (right). Credit: P Calsou / JB Charbonnier

Explore further: New drug candidate makes cancer cells more sensitive to radiotherapy

More information: Clement Nemoz et al. XLF and APLF bind Ku80 at two remote sites to ensure DNA repair by non-homologous end joining, Nature Structural & Molecular Biology (2018). DOI: 10.1038/s41594-018-0133-6

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