Crops hold harmful mutations that reduce productivity

March 15, 2018 by Krishna Ramanujan, Cornell University
Credit: CC0 Public Domain

New research reveals that even the highest performing maize crops contain rare harmful mutations that limit crop productivity.

These so-called deleterious result from errors that occur randomly every generation and from ancient mutations genetically linked to a beneficial genetic variation that was selected during crop domestication and breeding.

"The next generation of improving crop yields is likely to come by fixing these kinds of , which could lead to improved crop yields, more efficient high-performing plants and being able to grow on less acreage," said Karl Kremling, lead author of a paper appearing March 14 in the journal Nature. Kremling is a graduate student in the lab of Ed Buckler, the paper's senior author and a research geneticist at the U.S. Department of Agriculture-Agricultural Research Service (USDA–ARS) and adjunct Professor of Plant Breeding and Genetics with Cornell's Institute of Biotechnology.

To evaluate the impact of deleterious mutations, the researchers created one of the largest public data sets of in plants. Deleterious mutations can lead to that is too high or too low, causing subpar performance. In humans, deleterious mutations, including those that dysregulate expression, can lead to diseases.

The data set includes nearly 300 lines of maize varieties across seven tissue types, leading to nearly 80 million observations of gene expression.

"It's a community resource that will allow maize and other crop researchers to address numerous important questions," said Buckler.

"The data set enables breeders to link their phenotype (observable trait) of interest to differences of gene expression," Kremling said. "If they are interested in some physiological or disease or nutritional trait, we now have enough samples and power to tease out the subtle correlations between their phenotype and gene expression."

In the paper, the data set allowed the researchers to link deleterious mutations in maize to abnormal phenotypes. They also showed that some of these rare mutations were made more abundant during the process of domestication.

"We were able to show that a substantial portion of the variation in productivity in is coming from dysregulation (suboptimal gene expression)," said Buckler.

The most effective way to fix deleterious mutations will likely involve gene editing.

Kremling used robotics and bioinformatics to create the massive data set. The dropping cost of sequencing has also made this resource possible.

Explore further: Cassava is genetically decaying, putting staple crop at risk

More information: Karl A. G. Kremling et al. Dysregulation of expression correlates with rare-allele burden and fitness loss in maize, Nature (2018). DOI: 10.1038/nature25966

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NoLeads
1.8 / 5 (5) Mar 15, 2018
still tinkering with something we do not fully understand, and failing miserably, I might add.
btw, no mention of g.m.o in this whole article. just whizzed right by it with some fancy terminology in replacement.
intriguing.
humy
5 / 5 (1) Mar 15, 2018
still tinkering with something we do not fully understand, and failing miserably,

Not "we"; that should be "you" don't understand. It is pure delusional arrogance to assume other people far smarter than you or I cannot understand any more about it than you; of course they (geneticists) understand more about it than you! And they haven't 'failed' because they haven't yet tried that one yet so you make no sense.
Ojorf
2.6 / 5 (5) Mar 16, 2018
still tinkering with something we do not fully understand, and failing miserably


What a failure, not.

https://phys.org/...-bt.html
humy
5 / 5 (1) Mar 17, 2018
still tinkering with something we do not fully understand, and failing miserably


What a failure, not.

https://phys.org/...-bt.html


Yes, indeed.
In this case (from your above link) the GM benefit isn't just economic (by preventing the crops, many of which are grown by poor farmers, just being pointlessly wasted by pests) but environmental (from massive reduction in the need for pesticide sprays).
Many of the less rational environmentalists should take notice of the latter and learn how GM can be used for environmental good instead of maintaining this mindless simplistic dogmatic belief of "GM = bad".

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