Study reveals messenger molecules in cell walls can double as hormones

October 7, 2014, SLAC National Accelerator Laboratory
In this rendering, the structure of the nuclear receptor transcription factor Steroidogenic Factor-1 (SF-1, shown in gray) is bound by the signaling phospholipid referred to as "PIP3" (blue and red). Credit: Raymond Blind/UCSF

Researchers have discovered that some common messenger molecules in human cells double as hormones when bound to a protein that interacts with DNA. The finding could bring to light a class of previously unknown hormones and lead to new ways to target diseases – including cancers and a host of hormone-related disorders.

Published in the Oct. 6 edition of Proceedings of the National Academy of Sciences, these results were made possible, in part, by X-ray experiments at the Department of Energy's SLAC National Accelerator Laboratory.

"This finding is comparable in its importance to the discovery of how the estrogen hormone triggers activity in , which was key in the development of anti-breast cancer drugs and other hormone treatments," Robert Fletterick, professor of biochemistry and biophysics at University of California, San Francisco, and one of the principal investigators in the study, said.

Resolving a Cellular Mystery

Researchers focused on messengers called signaling that act like bellhops in cell walls, escorting proteins to compartments within a cell and activating their functions. The results could explain why these messengers had been observed linked to proteins in the nucleus of cells; their purpose there had been a mystery.

X-ray crystallography at SLAC's Stanford Synchrotron Radiation Lightsource, a DOE Office of Science User Facility, provided the first detailed look at how this messenger acts as a hormone in binding to a specialized hormone-sensing protein called a nuclear receptor.

Renderings of a signaling phospholipid, PIP3, which was studied while bound to a nuclear receptor, SF-1. The phospholipid was found to behave as a hormone. Credit: Raymond Blind/UCSF

These receptors are known to interact with DNA in the cell's nucleus and directly regulate – a critical mechanism for carrying out the cell's functions. The experiment focused on a well-studied receptor called SF-1 because its mutations are believed to be associated with infertility and other reproductive disorders, and diseases including colon and pancreatic cancers.

In analyzing X-ray data measured at SSRL, researchers observed how the phospholipids act like hormones when docked into the SF-1 receptors. Hormones are key links in the communications chain between different types of cells and organs that turn on specific genes in cells and activate a broad range of responses.

"The greatest impact of this work might be to prompt scientists to take a new view of phospholipids and what they do in the cell," said Holly A. Ingraham, a UCSF professor who participated in the study.

"The idea that a component of a cell membrane such as a phospholipid could work as a , triggering gene expression, is quite novel," she said. "People have not really known what their role is in the nucleus. Now we can say for the first time we know why they are there: Some of them might be acting like hormones."

Form directs function: Phospholipids are normally thought of as components of cell membranes, but SLAC and UCSF scientists have discovered that they also function as hormones, altering the structure of nuclear receptors, a class of proteins that regulates genes. In this animation, the structure of the nuclear receptor transcription factor Steroidogenic Factor-1 (SF-1, colored gray) bound by the signaling phospholipid referred to as "PIP3" (colored blue and red), spins 360 degrees and then morphs between the PIP3-bound and unbound states, showing the change in structure of SF-1 induced by PIP3. This small change in shape dramatically alters the biological activity of SF-1, which is to bind and activate certain genes. Credit: Raymond Blind/UCSF
New Details in Bound Biomolecule

Ray Blind, a UCSF postdoctoral researcher who led the study, devoted years of effort to finding a way to prepare crystallized samples of two types of phospholipids that were separately bound to the SF-1 receptor. High-quality crystals were needed to capture high-resolution X-ray data of their contents and determine the structure of the biomolecular complexes.

Debanu Das, a staff scientist at SSRL's Structural Determination Core of the Joint Center for Structural Genomics, oversaw the experiments at SSRL. Based on highly automated X-ray data collection and analysis of about 250 crystal samples, scientists were able to fully map the 3-D atomic-scale structure of the biomolecules, revealing never-before-seen details.

Well-known hormones like estrogen and testosterone bind to and activate receptors by changing their shape. The study found that the phospholipids bind with the receptor protein in a more complex way than classic hormones do, which potentially enables the phospholipids to manipulate the shape of receptors in more profound ways.

The researchers said they hope to design synthetic molecules that can target the disease-associated structures in the receptor protein.

Explore further: Researchers examine role of hormone in response to ovarian cancer treatment

More information: R. Blind, et al., Proceedings of the National Academy of Sciences, 6 October 2014. DOI: 10.1073/pnas.1416740111

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