Genetic changes to basic developmental processes evolve more frequently than thought

Genetic changes to basic developmental processes evolve more frequently than thought
A wild-type Chironomus larva with normal head (left) and abdomen (right) development is shown. Credit: Urs Schmidt-Ott/University of Chicago

Newly evolved genes can rapidly assume control over fundamental functions during early embryonic development, report scientists from the University of Chicago. They identified a gene, found only in one specific group of midge flies, which determines the patterning of the head and tail in developing embryos. This newly discovered gene has the same developmental role as an unrelated, previously-known gene which appears to have been lost or altered in certain fly families during evolution. The findings, published in Science on May 7, suggest that evolutionary changes to the genetics of fundamental biological processes occur more frequently than previously thought.

"The that drive embryonic polarity are not conserved across and their evolutionary replacement does not seem to be rare at all," said study senior author Urs Schmidt-Ott, PhD, associate professor of organismal biology and anatomy at the University of Chicago. "The hijacking of this early developmental pathway by novel or newly evolved genes happens at a much higher frequency than previously thought."

In the common fruit fly Drosophila and related flies, the gene bicoid determines which end of an embryo will develop into the head and which will become the tail. However, most flies and other insects lack bicoid, and how they establish this head-to-tail polarity has been poorly understood. Early studies of chironomids, a group of mosquito-like midges, found that ultraviolet light or RNAse targeted toward the front portion of embryos led to double-abdomen formation (two tail ends and no head), which suggested that localized RNA in the anterior egg might function as head determinant.

To identify which gene products were being disrupted, Schmidt-Ott's team profiled and compared between the front and rear halves of Chironomus embryos. Out of thousands of candidates, the team identified a specific gene, which appeared to be necessary for the formation of head-to-tail polarity. Double-abdomen formation occurred when this gene, called panish, was silenced in early Chironomus embryos. These embryos could be returned to normal with the addition of an independent source of panish gene product.

Although panish and bicoid perform essentially the same function, they are structurally unrelated and found in completely separate families of flies. Both genes act by regulating other genes involved in genetic patterning, but panish represses them while bicoid activates them.

Genetic changes to basic developmental processes evolve more frequently than thought
In this image, a Chironomus larva displays abnormal double-abdomen formation (no head). The gene panish, silenced here, controls the development of the head. Credit: Urs Schmidt-Ott/University of Chicago

The team found no evidence of panish in flies other than Chironomus, suggesting that panish is a newly evolved gene that appropriated the function of regulating head-to-tail polarity. They also reexamined the occurrence of bicoid and discovered that the gene has been repeatedly lost or substantially altered in certain fruit flies and tsetse flies during evolution.

Despite the importance of head-to-tail patterning in , it appears that genes that regulate the process are poorly conserved in flies, and that new genes took over the role far more often than previously thought.

The discovery of this phenomenon now opens a multitude of new research avenues. Schmidt-Ott and his colleagues are now investigating questions such as how do genes appropriate new roles, why it happens so frequently and whether such instances share common features.

"It's astonishing how a newly evolved gene can, in a very short amount of time, take over control of such a fundamental process," Schmidt-Ott said. "Given that a small sample of examined genomes already suggests four independent fundamental substitutions, we probably are looking at the 'tip of the iceberg' for these events."


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More information: A cysteine-clamp gene drives embryo polarity in the midge Chironomus, www.sciencemag.org/lookup/doi/ … 1126/science.aaa7105
Journal information: Science

Citation: Genetic changes to basic developmental processes evolve more frequently than thought (2015, May 7) retrieved 17 September 2019 from https://phys.org/news/2015-05-genetic-basic-developmental-evolve-frequently.html
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JVK
May 11, 2015
http://www.scienc...abstract

Conclusion: Our study shows that mechanisms of AP patterning in insects are more labile than previously acknowledged. The functionally diverse primary axis determinants of fly embryos provide a remarkable opportunity for studying molecular innovations in the context of gene regulatory networks.

My comment: The gene regulatory networks link metabolic networks to RNA-mediated cell type differentiation. Nutrient uptake is linked from RNA-directed DNA methylation to fixation of amino acid substitutions via the species-specific pheromone-controlled physiology of reproduction. The theory that new genes "evolve" is antithetical to everything currently known to serious scientists about the biophysically constrained chemistry of nutrient-dependent amino acid substitutions and protein folding.

Simply put, new genes are created when ecological variation leads to ecological adaptations.

May 11, 2015
Speaking of word salad, I think Catalina dressing is ready for a comeback.

JVK
May 11, 2015
Speaking of biologically uninformed science idiots, who comment on phys.org news as if they were capable of understanding any of the findings presented by serious scientists, it is their characterization of comments by others as "word salad" that attests to their level of self-imposed ignorance.

See for comparison: http://rna-mediated.com/ Here you will find information that links physics, chemistry, and molecular epigenetics via RNA-mediated events such as the de novo creation of olfactory receptor genes in order to encourage a public discussion of a paradigm shift.

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