Orange cats come with genetic twist: X-linked mutation points to new mechanism for coloring

Now, researchers from Kyushu University, Japan, have found the X-linked mutation behind orange fur in house cats. This deletion mutation, a type of mutation where a section of DNA is missing, not only explains the peculiarity of ginger genetics, but also reveals an entirely new mechanism for promoting orange coloring in animals.

The findings are confirmed by a second independent study by researchers at Stanford University, U.S., with both papers publishing simultaneously in Current Biology.

"Identifying the gene has been a longtime dream, so it's a joy to have finally cracked it," says Professor Hiroyuki Sasaki, lead author of the study, self-proclaimed cat-lover, and geneticist at Kyushu University's Medical Institute of Bioregulation and the Institute for Advanced Study.

For over a century, scientists have suspected that the orange gene is located on the X chromosome. Male cats, with only one X chromosome, will have orange coats if they inherit the orange gene. Females, with two X chromosomes, need two copies of the gene to be fully orange, making them less common. If females inherit one orange and one black gene, they develop the patchy or mottled coats seen in calicos and tortoiseshells.

Calico cats (left) and tortoiseshell cats (right) are the classic example of X chromosome inactivation, where either an orange color or a black color variant of a gene on the X chromosome is active in skin cells, resulting in orange and black patches. Credit: Hiroyuki Sasaki/Kyushu University

Professor Hiroyuki Sasaki, a geneticist at Kyushu University with a soft spot for cats, makes fast friends with one of the calico cats at a local shelter while on his hunt for the gene behind orange fur. Credit: Hiroyuki Sasaki/Kyushu University

Calico cats have X chromosomes that have two variants of the gene ARHGAP36. In orange patches of fur, the active chromosome (red) contains a deletion mutation in ARHGAP36, which increases its expression and reduces the activity of melanogenesis genes. This leads to higher levels of pheomelanin, resulting in ginger fur. In black patches of fur, the active chromosome (red) does not contain the deletion, and ARHGAP36 is suppressed. The activity of melanogenesis genes remains high, and eumelanin is produced, resulting in black fur. Credit: Hiroyuki Sasaki/Kyushu University