Physicist defends validity of Stokes-Einstein equation in living systems

Physicist defends validity of Stokes-Einstein equation in living systems
Temperature dependence of HNS diffusion in live and dead E. coli. (a),(b) MSD of HNS in (a) live and (b) dead E. coli at different temperatures. Dashed lines are fitted curves using MSD=4Dτα. Error bars represent standard errors of the means (SEM). (c) Dependence of the generalized diffusion coefficient of HNS proteins in live (green circles) and dead (red squares) E. coli. Error bars stand for fitting errors. Red dotted lines are fittings with linear equations, while black dashed lines are fittings with the Arrhenius equation. Credit: Physical Review Letters (2022). DOI: 10.1103/PhysRevLett.129.018101

A physicist at the University of Arkansas has defended the validity of the Stokes-Einstein equation, one of Albert Einstein's most famous equations, as it relates to biology. The research will help scientists better understand antibiotic resistance and the mechanical properties of cancer cells.

Working with proteins in live bacteria, Yong Wang, assistant professor in the Fulbright College of Arts and Sciences, tested the 117-year-old equation, which provided evidence for the reality of atoms and molecules. He found that the famous equation remained valid for explaining how molecules move inside bacteria.

"Bacterial cytoplasm is not a simple soup," Wang said. "Our study showed that it might be more like spaghetti with tomato sauce and meatballs."

Cytoplasm is the crowded and complex material inside bacteria. It has high concentrations of large biological molecules, including millions of proteins, carbohydrates and salts, and all kinds of polymers and filaments, such as DNA and RNA.

Wang found that although Einstein's equation appeared to be off for proteins' motion within live bacteria, it remained valid by taking into account the entangled polymers and filaments inside bacteria.

The so-called Einstein relation—also called the Stokes-Einstein equation—is one of Einstein's major research accomplishments in his "year of miracles," 1905. Explaining the mobility of particles through liquid, the equation has been characterized as a stochastic model for Brownian motion, meaning particles move around randomly because of collisions with surrounding molecules. Most importantly, the theory provided early for the reality of atoms and molecules.

However, over the past two decades, scientists have challenged the theory's validity as it applies to what's inside and bacteria. Wang's study adds to this body of knowledge, helping resolve the current controversy.

More importantly, it provides a foundation for assessing the mechanical properties of cells and bacteria based on the Einstein relation. This should help scientists understand of certain microorganisms and the mechanical properties of cancer cells, which differ from the of normal, healthy cells.

On this study, which was published in Physical Review Letters, Wang worked with Lin Oliver, professor and chair of the Department of Physics, and Asmaa Sadoon, doctoral student in the microelectronics-photonics program.


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More information: Asmaa A. Sadoon et al, Revisiting the Temperature Dependence of Protein Diffusion inside Bacteria: Validity of the Stokes-Einstein Equation, Physical Review Letters (2022). DOI: 10.1103/PhysRevLett.129.018101
Journal information: Physical Review Letters

Citation: Physicist defends validity of Stokes-Einstein equation in living systems (2022, July 13) retrieved 1 October 2022 from https://phys.org/news/2022-07-physicist-defends-validity-stokes-einstein-equation.html
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