Clarification of microbial community structures around Antarctic lakes

Clarification of microbial community structures around Antarctic lakes
Sites of sample collection. Credit: Toyohashi University of Technology

The research group of Assistant Prof. Yuu Hirose of the Department of Applied Chemistry and Life Science at Toyohashi University of Technology, Niigata University, the Japan Agency for Marine-Earth Science and Technology (JAMSTEC), and the National Institute of Polar Research, has revealed the community structure of microorganisms living around freshwater lakes in the Langhovde and Skarvsnes ice-free areas of Antarctica.

An analysis of samples collected from shores, puddles, etc. using a next-generation sequencer has verified that cyanobacteria and tardigrades are widely distributed and specific eukaryotic algae are dominant in certain sites. This knowledge will contribute to clarification of adaptation mechanisms of microorganisms to severe physical stresses in Antarctica, e.g. low temperatures, ultraviolet irradiation and .

Most of Antarctica is covered with thick snow and ice, however; there are ice-free areas where land is exposed. The ice-free areas occupy only about 0.2% of the area in Antarctica, but a variety of microorganisms have been observed, and the areas are also called "Antarctic oases." Two ice-free areas called Langhovde and Skarvsnes exist near Showa Station, Antarctica, and there are 50 or more large and small lakes in these areas. Water does not freeze at the bottom of these lakes throughout the year and a unique ecosystem called "moss pillar," that mainly includes moss and fungi, is distributed.

Assistant Prof. Yuu Hirose and others of the Department of Applied Chemistry and Life Science at Toyohashi University of Technology focused on shores of and also puddles and streams from snow meltwater. These environments are completely frozen during the winter season and accordingly are under more extreme stress (e.g. freezing and thawing and temperature changes), than that at the bottom of lakes.

Clarification of microbial community structures around Antarctic lakes
Proportion of taxa of prokaryotes (left) and eukaryotes (right) identified in this study. Credit: Toyohashi University of Technology

In recent years, a technique for analyzing microbial community structure in environments using a next-generation sequencer has been developed. This method has a higher sensitivity and better quantitative properties than those of conventional techniques such as microscope observation. Assistant Prof. Hirose used this method to analyze microbial community structures at a total of 13 sites in the vicinity of Antarctic freshwater lakes. The results revealed that filamentous cyanobacteria were widely distributed, and also that the proportion of unicellular cyanobacteria and cyanobacteria with cell differentiation capacity (called heterocysts), was small.

The most widely distributed eukaryotes were tardigrades with resistance to dryness and low temperatures. It was verified that specific eukaryotic algae such as cryptophyceae and green algae were dominant in some sites. There were also sites including nematodes feeding on algae. It is interesting that the fungi most dominant in moss pillars were not majority in these areas. The above results revealed that a variety of organisms live even under severe environments, e.g. the shallower parts of lakes, and puddles and streams.

Clarification of the molecular mechanism of how microorganisms living in these areas adapt to severe stresses is expected in the future. It is important to clarify the relationship between environmental factors, such as temperature and light conditions, and community structures of microorganisms. The monitoring and maintenance of the Antarctic ecosystem based on this information is also important.

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More information: Yuu Hirose et al, Investigating Algal Communities in Lacustrine and Hydro-Terrestrial Environments of East Antarctica Using Deep Amplicon Sequencing, Microorganisms (2020). DOI: 10.3390/microorganisms8040497
Citation: Clarification of microbial community structures around Antarctic lakes (2020, May 15) retrieved 28 November 2020 from
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