Using iPS cells to decipher the timing at the beginning of life

Reconstructing the clock of human development
Graphical abstract of the current paper. Researchers reconstituted the human segmentation clock with iPS cells and analyzed the key genes involved Credit: Kyoto University/Cantas Alev/Misaki Ouchida

Researchers led by Kyoto University have reconstituted the human segmentation clock, a key focus of embryonic development research, using induced pluripotent stem cells (iPSCs).

From the first division of a fertilized egg, a complex network of proteins and genes push and pull on each other to construct the pattern of cells that form organs. Like the pendulum on a clock, each swing and pulse needs to align carefully to maintain the rhythm that forms life.

However, much of our understanding on early human development is exceedingly limited, a key reason being the lack of experimental models that can reproduce these complex biological processes.

"For example, a process called 'somitogenesis' begins about 20 days after fertilization in humans. This is when the embryo develops distinct segments called 'somites' and determines the basic segmented pattern of the body," explains team leader Cantas Alev from Kyoto University's Institute for the Advanced Study of Human Biology, ASHBi. "Somites eventually contribute to the formation of the vertebrae and ribs."

Emergence of somites is determined by the , a genetic oscillator that controls and guides their emergence. While segmentation clock genes and their role in development have been studied in mice, chicks and zebrafish, almost nothing is known about them in humans.

A way of addressing this problem is to reconstruct the clock using . In their paper published in Nature, a team consisting of members from ASHBi, Kyoto University's Center for iPS Cell and Research Application, and RIKEN focused on using human iPS cells to form the pre-somitic mesoderm, the precursor cells of somites.

"We began by mimicking the signaling pathways active during early development. Applying our knowledge in embryology, we succeeded in generating a culture of pre-somitic mesoderm, or PSM, along with its progeny," continues Alev. "Studying the genes that were being expressed in a rhythmic pattern showed not only that they oscillated with a period of five hours, but also revealed the novel genetic components of the segmentation clock we were looking for."

In addition to the simple oscillation of genes, the team also replicated a second hallmark of the segmentation clock, a wave of expression. Using gene-editing technology, they then assessed the function of the key genes related to spine deformation.

As expected, mutations in these dramatically altered aspects of the clock including synchronization and oscillation. They then went further by generating iPS cells from patients with aforementioned genetic defects, identified the mutations involved, and corrected them.

The study demonstrates how elegantly iPS can be used to recapitulate distinct aspects of human embryonic development and other complex .

"Like many developmental biologists, I am fascinated by embryos and embryonic development. The elegance and beauty of how complex organs and tissues are formed from very simple initial structures is astounding. I hope to reconstruct and analyze many other aspects of embryonic development, and expand our still limited understanding of human and non-human development."

The paper "Recapitulating the Human Segmentation Clock with Pluripotent Stem Cells" appeared on 2 April 2020 in Nature.

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More information: Recapitulating the human segmentation clock with pluripotent stem cells, Nature (2020). DOI: 10.1038/s41586-020-2144-9 ,
Journal information: Nature

Provided by Kyoto University
Citation: Using iPS cells to decipher the timing at the beginning of life (2020, April 1) retrieved 10 May 2021 from
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