Mapping millet genetics

Mapping millet genetics
Proso millet growing in western Nebraska, which is believed to have been one of the earliest domesticated crops. It’s grown in the developing world as a food source and in the U.S. and Europe for forage and bird seed. Credit: Santosh Rajput

In the semi-arid tropics of Asia and Africa, conditions can be difficult for crops. Plants need to have short growing seasons, survive on poor soils and tolerate environmental stresses.

Enter the millets.

Close to 97 percent of millets grown worldwide are produced in developing countries. Millets are a diverse group of cereal crops. Importantly, they generally have high nutritional content.

"However, millets have been largely overlooked by modern genetics research," says Matthew Johnson, a researcher at the University of Georgia. In a new study, Johnson, along with colleagues in India, have generated some of the first genetic resources for three different varieties of millets.

As are created for less-studied crops, researchers can better leverage the within the crop family. This can lead to the development of new varieties of crops. "Our results will give researchers tools to develop better millet varieties for farmers," says Johnson.

Most farmers who grow millets are smallholders (farming less than five acres). Millets are crucial for their livelihood. That's because they can grow on marginal lands and need less water than most crops.

"Millets also grow much quicker than most other major crops," says Johnson. That's important because farmers can plant millets if weather or natural disasters cause initial plantings to fail. "So, with millets, the farmers can at least get some harvest," he says.

Johnson's team sequenced and analyzed DNA from three species of millets—kodo, little and proso. "These are three that have had relatively few resources developed for them," Johnson explains.

The plant source materials were obtained from the International Crops Research Institute for the Semi-Arid Tropics in India. The researchers' goal was to better understand the genetic diversity within and between each variety of millet. "Understanding this diversity is an important step in developing better varieties of the crop," says Johnson.

They uncovered tiny differences in the DNA sequences of the various plants. These may ultimately be connected to characteristics, such as drought tolerance and growth rate.

"Genetics and go hand-in-hand," says Johnson. Growing different kinds of millets can provide information about yield and flowering time, among other characteristics. "We need to pair these results with knowledge of the genetic relatedness of the millet plants," he says.

By collating field results and genetic data, researchers identify desired traits and develop improved varieties. "We can continue improving these varieties year after year," says Johnson.

An important part of breeding desirable varieties of a crop is understanding how existing ones are related to each other. "We were able to find evidence that the previous understanding of how the millet varieties are related to each other didn't always reflect their genetics," Johnson explains.

The existing classifications were done based on physical characteristics. But it turns out those may not be accurate reflections of close genetic relationships.

"Think of it as trying to classify genetic relationships among humans by color," he says. "Hair color is genetically controlled. Everyone with blond hair, for example, has some genetic relatedness."

"But there is so much more than just hair color that determines who we are related to genetically," says Johnson. "Sometimes siblings can have a different hair color. However, they will be more closely related to each other than to a stranger who happens to have the same ."

Uncovering the underlying genetics, as in this study, can help plant breeders develop varieties with desired physical characteristics. "Millets are a great crop," says Johnson. "I believe they can diversify our diet and contribute to food sources and security as our climate continues to change."

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More information: Matthew Johnson et al. Genome-Wide Population Structure Analyses of Three Minor Millets: Kodo Millet, Little Millet, and Proso Millet, The Plant Genome (2019). DOI: 10.3835/plantgenome2019.03.0021
Citation: Mapping millet genetics (2019, October 21) retrieved 26 June 2022 from
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