Scientists develop novel method to monitor molecular aggregation

January 14, 2019, Hong Kong University of Science and Technology
Simulated chiroptical properties versus dihedral angle θ of (R)1,1'-binaphthyl. Credit: The Hong Kong University of Science and Technology

Chiral molecules are defined as molecules that are non-superimposable on their mirror images, much like that of left and right human hand bone structure. There are many examples of chiral molecules in nature, including proteins and deoxyribonucleic acid (DNA). The dynamic processes of these chiral molecules are highly significant to understanding their biological activity. Indeed, protein aggregation is associated with many pathological conditions, including Alzheimer's disease, which is caused by the build-up of beta-amyloid fragments within the brain over time. Thus, it is important to understand and observe such (chiral) molecular aggregation and conformation over time.

Currently available options for analysing molecular conformation include electron microscopy and nuclear magnetic resonance (NMR) spectroscopy. Both methods require sample extraction under harsh conditions, a time-consuming process that can damage the molecular conformation of the sample. The second limitation to these methods is that the ultimate result will only provide the conformation of the compound at a specific point in time.

This new method involves aggregation-annihilation circular dichroism (AACD) and a well-studied molecule called 1,1'-binapthyl derivatives (BN). It was observed that the CD signals of the BN were annihilated after BN aggregates were formed, likely due to the conformational change of the 1,1'-binapthyl group during the aggregation process.

In their work, four BN-based (P-1 to P-4 respectively) were synthesized through simple Suzuki coupling reactions. Polymers with the "open" BN units showed clear signs of aggregation-annihilated chiral dichroism (AACD). When the BN units were locked, the annihilation is restrained. The polymers were first dissolved in an organic solvent, tetrahydrofuran (THF). The second step involved adding water, a poor solvent for the polymers, was gradually added to the solution, which led to aggregate formation. CD spectra of the different polymers were taken at different water fractions and analysed. This methodology allowed researchers to analyse the molecular aggregation process in real time.

HKUST scientists develop novel method to monitor molecular aggregation
Experimental analysis of chiroptical properties within the process of aggregation for polymers P-1 to P-4. Credit: The Hong Kong University of Science and Technology

A (MD) simulation of the polymers was performed in THF and water to further examine the relationship between CD annihilation and conformational change. This model indicated that open P-1 showed a broad distribution of dihedral angle θ but locked P-3 showed a narrow distribution. From solution to aggregate, the θ in open polymers (P-1 and P-2) becomes more negative and part of the conformers relax from cisoid to transoid. The θ in locked polymers (P-3 and P-4) increases slightly and cisoid conformation is preserved throughout the aggregation process.

"The combination of MD simulation and analysis on the change of CD couplet intensity and wavelength splitting during the process is thus an appealing method of in-situ and real-time monitoring of the conformational change," said HKUST's Prof. Ben-Zhong TANG, who led this research.

"This is a far cheaper, simpler method of monitoring conformational changes in chiral macromolecules means that we can apply this method to understanding many biological processes more easily," said Dr. Haoke ZHANG, a co-author of the paper.

Schematic representation of the conformational change of (R)?1,1?-binaphthyl moieties during the aggregation process. Credit: The Hong Kong University of Science and Technology

Explore further: Artificial enzyme for asymmetric synthesis using a synthetic chiral polymer

More information: Haoke Zhang et al, In situ monitoring of molecular aggregation using circular dichroism, Nature Communications (2018). DOI: 10.1038/s41467-018-07299-3

Related Stories

Chirality in real time

January 11, 2019

Distinguishing between left-handed and right-handed (chiral) molecules is crucial in chemistry and the life sciences, and is commonly achieved using a method called circular dichroism. However, during biochemical reactions, ...

A boundary dance of amyloid-β stepping into dementia

January 2, 2019

Alzheimer's disease is caused by aggregates of amyloid-β (Aβ) peptides. This aggregation is accelerated at the cell membrane surface. Using molecular dynamics simulations and NMR experiments, the research group at ExCELLS ...

Chiral crabs

September 22, 2017

Sander Wezenberg, and PhD students Thomas van Leeuwen and Kaja Sitkowska, from the University of Groningen in the Netherlands, spoke to us about their work in chirality and molecular motors, and the seaside scene on the cover ...

Recommended for you

Materials chemists tap body heat to power 'smart garments'

January 22, 2019

Many wearable biosensors, data transmitters and similar tech advances for personalized health monitoring have now been "creatively miniaturized," says materials chemist Trisha Andrew at the University of Massachusetts Amherst, ...


Please sign in to add a comment. Registration is free, and takes less than a minute. Read more

Click here to reset your password.
Sign in to get notified via email when new comments are made.