A new study has cast doubt on leading theory for how tiny creatures have evolved for tens of millions of years—without ever having sex.
Most animals reproduce sexually, a process which shuffles genes from parent to offspring. This makes natural selection more efficient and allows animals to evolve defences against changing environmental conditions more rapidly, especially new diseases.
Bdelloid rotifers however appear to be an exception to this rule: they are all female, and their offspring are clones of their mothers. Bdelloids are microscopic animals that live in freshwater and damp habitats across the world. Despite their apparent lack of sex, we know they have evolved for tens of millions of years into more than 500 species.
By studying their genomes – the set of all the genes that define an animal's characteristics – researchers thought they had identified an explanation for how bdelloids had 'gotten away' with no sex for millions of years.
However, a new study, published today in PLOS Biology and led by Imperial College London researchers, reveals this mechanism may not be the main explanation for the bdelloids' success.
Repair and upgrade?
Many species of bdelloid endure periods of drying out, called desiccation. Although they survive desiccation, the process damages their DNA, which they need to repair when rehydrated.
Based on a previous study of the genome of a species that survives desiccation, researchers had proposed that the repair of DNA might remove some of the problems of being asexual, for example by removing harmful mutations and possibly allowing occasional recombination of genes to occur.
This theory made key predictions about what the genomes of the small number of bdelloid species that cannot survive desiccation should look like. The new study looked at the genomes of three further species, including some that do not undergo desiccation.
The researchers found that the predicted differences between species that can and cannot survive desiccation were not observed. This suggests that DNA repair following desiccation may not be as important as previously thought, and that other factors may need to be considered to explain bdelloid evolution.
Senior researcher Professor Tim Barraclough, from the Department of Life Science at Imperial, said: "We have been building up this story of how these creatures manage to change based on their remarkable ability to survive desiccation.
"However, when we open up the investigation to other sexless species of bdelloid that do not dry out, we find that the story does not play out. We thought we were understanding more about these creatures, but this is a spanner in the works."
Stealing genes across species
Although the latest study shows that desiccation is not key to genome changes, the team did confirm that all the species investigated so far show unusual levels of 'horizontal gene transfer' - which means they incorporate and use foreign DNA from distantly related organisms in their genomes.
Bdelloid species are known to have taken up thousands of genes from plants, bacteria, fungi, and single-celled organisms. Different species appear to have adapted to their unique environments by taking up DNA that benefits their survival, providing another route to evolution.
It is not known exactly how bdelloids incorporate foreign DNA, but DNA repair following desiccation has been proposed as one route for those species that undergo drying out. Next, the team want to look more closely at these foreign genes for clues as to how they were acquired.
They also want to study the genomes of individuals within the same population over time to see how their genomes change.
Can't rule out sex
Finally, although no males have ever been found, this new study of rotifers' genomes suggests scientists can't rule out sex as firmly as previously thought. Previous evidence had suggested that the structure of the bdelloid genome made conventional sex impossible.
Sexual animals have two copies of each gene arranged along matching chromosomes, one from the father and one from the mother. The first bdelloid genome sequenced revealed that the two copies of genes were often on the same chromosome, which is incompatible with their inheritance on chromosomes from a father and a mother. The new study, however, did not find these same patterns in the three new genomes.
Lead author Dr. Reuben Nowell said: "We haven't proved they are having sex, it's just that we can't prove that they aren't based on the current genome results. Other species of rotifers have identifiable males, but no bdelloid rotifer males have ever been found.
"We will continue to investigate these fascinating creatures, but for now, the mystery has only deepened."
Explore further: DNA 'ingesting': A tenth of quirky creature's active genes are foreign
Reuben W. Nowell et al. Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species, PLOS Biology (2018). DOI: 10.1371/journal.pbio.2004830