Researchers reveal how stem cells make decisions

October 23, 2017
Researchers reveal how stem cells make decisions
Credit: Leiden University

Embryonic stem cells have the remarkable ability to develop into any type of cell. On their way to become for example a liver or a heart cell, they must repeatedly decide between alternative developmental paths. How they make these decisions is largely unknown. An international team of biophysicists has now charted the decision-making process in unprecedented detail, watching the cells as they make up their mind. Publication in Nature Communications on 23 October.

Embryonic stem cells hold tremendous potential for medical applications, like the repair of diseased tissue or personalized drug screening. These applications require stem cells to be transformed into precisely defined mature cell types, which remains challenging. More often than not, a population of stem cells will grow into different kinds of cells, which hampers biomedical applications. For example, an assay that tests liver toxicity should not contain . To understand and control the maturation process better, a team of scientists from Leiden, Utrecht and Boston charted the path from stem cell to mature cell types, one cell at a time.

RNA-sequencing

Leiden physicist Stefan Semrau and co-workers applied a revolutionary new method to : single-cell RNA-sequencing. This technique has the ability to measure the abundance and sequence of all RNA molecules in . The composition of RNA molecules is characteristic of a certain cell type—a genetic business card. Genes that are important in a particular cell type will be represented by many RNA molecules, while other genes are inactive.

Researchers reveal how stem cells make decisions
This microscope image shows RNA molecules that have been made visible using fluorescence. The RNAs shown in green and red, respectively, belong to two different genes (Gata6 and Pax6) that play a very important role in the decision-making process. Credit: Leiden University

Using RNA-sequencing the team found an intricate dynamical pattern. When they treated stem cells with retinoic acid—an important signaling molecule—all stem cells initially reacted in a similar way. After 24 hours, however, the cell population split up in two groups that persisted until the end of the 4-day experiment. In other words, the decided between two alternative cell types. The experiment revealed which proteins are involved in this process, which will help to understand cellular decision-making at the molecular level.

The new sequencing study is also an important step towards understanding embryonic development. This is because the splitting of an initially homogeneous population is the fundamental process by which all in our body are created from a single, fertilized egg.

Explore further: 3-D organoids and RNA sequencing reveal the crosstalk driving lung cell formation

More information: Stefan Semrau et al. Dynamics of lineage commitment revealed by single-cell transcriptomics of differentiating embryonic stem cells, Nature Communications (2017). DOI: 10.1038/s41467-017-01076-4

Related Stories

Stem cells born out of indecision

December 18, 2014

Scientists at the University of Copenhagen have gained new insight into embryonic stem cells and how blocking their ability to make choices explains why they stay as stem cells in culture. The results have just been published ...

New tools to study the origin of embryonic stem cells

March 23, 2017

Researchers at Karolinska Institutet have identified cell surface markers specific for the very earliest stem cells in the human embryo. These cells are thought to possess great potential for replacing damaged tissue but ...

Gene "bookmarking" regulates the fate of stem cells

December 7, 2016

A protein that stays attached on chromosomes during cell division plays a critical role in determining the type of cell that stem cells can become. The discovery, made by EPFL scientists, has significant implications for ...

Researchers engineer new thyroid cells

February 2, 2017

Researchers have discovered a new efficient way to generate thyroid cells, known as thyrocytes, using genetically modified embryonic stem cells.

Recommended for you

Mammal long thought extinct in Australia resurfaces

December 15, 2017

A crest-tailed mulgara, a small carnivorous marsupial known only from fossilised bone fragments and presumed extinct in NSW for more than century, has been discovered in Sturt National Park north-west of Tibooburra.

Finding a lethal parasite's vulnerabilities

December 15, 2017

An estimated 100 million people around the world are infected with Strongyloides stercoralis, a parasitic nematode, yet it's likely that many don't know it. The infection can persist for years, usually only causing mild symptoms. ...

0 comments

Please sign in to add a comment. Registration is free, and takes less than a minute. Read more

Click here to reset your password.
Sign in to get notified via email when new comments are made.