Researchers prove the effectiveness of a new drug against malaria using synchrotron light

July 22, 2014 , Universitat Politècnica de Catalunya (UPC)
Lourdes Campos and Francisco Acosta-Reyes, researchers from the UPC research group Crystallography, Structure and Function of Biological Macromolecules

Researchers from the Universitat Politècnica de Catalunya · BarcelonaTech (UPC), the Instituto de Química Mèdica (IQM-CSIC) and the University of Glasgow have proved that the CD27 drug is a true alternative against malaria. They have analysed the crystalline structure of the DNA with the drug by performing X-ray diffraction experiments at the ALBA synchrotron.

An international group of researchers led by Lourdes Campos from the Department of Chemical Engineering at the Universitat Politècnica de Catalunya · BarcelonaTech (UPC) has proved that the CD27 drug can be a reliable option against malaria. Researchers came to this conclusion after studying the 3D of the complex of DNA with the drug.

The CD27 drug is a complex synthesised by researchers led by Christophe Dardonville at the Instituto de Química Médica of the Spanish National Research Council's/ (IQM-CSIC) in Madrid. "CD27 is chemically related to diamidines – molecules with two amidines – and has previously been used with success in other Trypanosoma species that produce the 'sleeping sickness' in Africa and Chagas disease in South America", says Lourdes Campos.

Results show how the CD27 drug completely covers the minor groove of the DNA, preventing the typical development of the parasite and causing its death.

This research helps to understand this family of compounds and may significantly contribute to the development of new, more effective drugs against malaria.

Obtaining the DNA crystal

Once the samples of the drug were validated by Harry P. De Koning, a researcher at the University of Glasgow, they were sent to the UPC research group in Crystallography, Structure and Function of Biological Macromolecules (MACROM) led by Lourdes Campos. For over a year, the group has been working to obtain the crystalline structure of DNA.

The 3D crystalline structure of the complex of DNA with the drug.

Obtaining a DNA crystal is a multiparametric process – it requires different variables – and, before obtaining a DNA crystal with the drug, several tests under different conditions are required. The crystal must present a very high molecule order in the crystalline network, as this is essential for solving the tridimensional structure of the complex. "Obtaining a good crystal is a long and hard task and requires the collaboration of groups from different disciplines. With the help of synchrotrons like the ALBA, science can make a big step forward in comparison with the methods that were available 20 years ago", says Lourdes Campos.

In the next phase, researchers analysed the crystals of the complex of DNA with the drug using X-rays at the XALOC macromolecular diffraction beamline of the ALBA synchrotron. X-rays, when they pass through the crystal and diffract, project images of spots which, after mathematic analysis, can solve the tridimensional structure of a molecule. When MACROM researchers solved the 3D structure, they identified the details of CD27's structure, enabling the drug to recognise the regions of DNA covering the minor groove and preventing the development of the parasite. At the same time, these studies contribute to a rational design of new drugs, bearing in mind the molecular interactions caused by CD27.

Results of this research have been validated and deposited at the Protein Data Bank, a 3D database of proteins and nucleic acids, and published in the journal Acta Crystallographica D.

The is patent-free and can be produced by any pharmaceutical company interested in its development.

Malaria, responsible for more than one million deaths every year

Malaria is an infectious disease caused by a parasite of the Plasmodium genus that is transmitted by a mosquito bite. It deeply affects African countries, although it is also present in some areas of Latin America and Asia (with an estimated at-risk population of 3.4 billion, according to the World Health Organization). It is thought that malaria causes more than one million deaths every year and the parasite's resistance to existing drugs is an obstacle in the treatment of the disease.

The ALBA synchrotron

ALBA is the Spanish . It is a complex of electron accelerators that produce synchrotron light, which allows the atomic structure of matter to be visualised and its properties to be studied.

ALBA has been in operation since May 2012 and has seven experimental beamlines.

This scientific infrastructure produces 5,000 hours of beamtime per year and is available for academics and the industrial sector and serves more than 1,000 researchers every year.

More information: "In and out of the minor groove: interaction of an AT-rich DNA with the drug CD27" Francisco J. Acosta-Reyes, Christophe Dardonville, Harry P. de Koning, Manal Natto, Juan A. Subirana and J. Lourdes Campos. Acta Crystallographica Section D Biological Crystallography 70 1614-1621 ( … 00/dz5324/dz5324.pdf)

Provided by Universitat Politècnica de Catalunya (UPC)