Algorithm developed to detect cancer genes

May 09, 2006

New York scientists say they have developed an algorithm that enhances the ability to detect cancer genes.

The researchers at New York University's Courant Institute of Mathematical Sciences say they have applied their algorithm to map the set of tumor-suppressor genes involved in lung cancer.

The algorithm uses data from Affymetrix's gene-chips that can scan hundreds of patients' genomes to find gains and losses in gene-copies.

Previous research had found certain gene-chips -- a technology that allows the genome-wide screening for mutations in genes or changes in gene expressions all at once -- shed light on genes and mechanisms involved in the onset and spread of cancer.

Specifically, chromosomal segments, when deleted in a single or both copies of genomes of a group of cancer patients, point to locations of tumor suppressor genes implicated in the cancer. The NYU study focused on automatic methods for reliable detection of such genes, their locations and their boundaries.

The findings will appear in the July issue of the American Journal of Human Genetics.

Copyright 2006 by United Press International

Explore further: Slow walking speed and memory complaints can predict dementia (w/ Video)

add to favorites email to friend print save as pdf

Related Stories

Microsoft Excel-based algorithm predicts cancer prognosis

Sep 02, 2010

Using readily available computer programs, researchers have developed a system to identify genes that will be useful in the classification of breast cancer. The algorithm, described in BioMed Central's open access Journal of ...

Amino acid fingerprints revealed in new study

Apr 06, 2014

Some three billion base pairs make up the human genome—the floor plan of life. In 2003, the Human Genome Project announced the successful decryption of this code, a tour de force that continues to supply ...

Recommended for you

Study recommends inmate immunity test

15 minutes ago

(AP)—Federal experts are recommending that California test inmates for immunity to a sometimes fatal soil-borne fungus before incarcerating them at two Central Valley state prisons where the disease has killed nearly three ...

User comments : 0