DOE unveils experimental metagenomics data

Mar 30, 2006

The U.S. Department of Energy's Joint Genome Institute has released IMG/M, an experimental metagenome data management and analysis system.

Researchers say IMG/M integrates metagenome, also known as aggregate genome, data from diverse environmental microbial communities with isolate microbial genome data from the Walnut Creek., Calif.-based, JGI's Integrated Microbial Genomes system.

That allows the application of IMG's comparative analysis tools on metagenome data. New tools also enable the examination of functional annotation profiles across microbial communities and isolated organisms of interest, and the analysis of strain-level heterogeneity within a species population in metagenome data.

Thus far, IMG/M has been used for completing the analysis of biological phosphorus removing sewage sludge communities and for studying the metagenomes of several key microbial communities recently sequenced by JGI, including the hydrogen-producing consortium colonizing the termite hindgut.

IMG/M will be demonstrated Friday during a Walnut Creek, workshop as part of the Department of Energy's Joint Genome Institute First Annual User Meeting.

Copyright 2006 by United Press International

Explore further: Research geared to keep women from fleeing IT profession

add to favorites email to friend print save as pdf

Related Stories

Venus flytrap of the sea

Jun 20, 2014

A team of USC Dornsife biologists affiliated with the USC Wrigley Institute for Environmental Studies is working on a $1.2 million study of marine organisms that are the microscopic equivalent of the Venus ...

Recommended for you

Bronze Age wine cellar found

13 hours ago

A Bronze Age palace excavation reveals an ancient wine cellar, according to a study published August 27, 2014 in the open-access journal PLOS ONE by Andrew Koh from Brandeis University and colleagues.

Orphaned children can do just as well in institutions

13 hours ago

The removal of institutions or group homes will not lead to better child well-being and could even worsen outcomes for some orphaned and separated children, according to new findings from a three-year study across five low- ...

User comments : 0