Hydrogen powers important nitrogen-transforming bacteria

Aug 29, 2014
Electron microscopy image showing Nitrospira cells at 70,000x magnification. Credit: Boris Nowka and Eva Spieck, University of Hamburg

Nitrite-oxidizing bacteria are key players in the natural nitrogen cycle on Earth and in biological wastewater treatment plants. For decades, these specialist bacteria were thought to depend on nitrite as their source of energy. An international team of scientists led by Holger Daims, a microbiologist at the University of Vienna, has now shown that nitrite-oxidizing bacteria can use hydrogen as an alternative source of energy. The oxidation of hydrogen with oxygen enables their growth independent of nitrite and a lifestyle outside the nitrogen cycle. The study is published in the current issue of the journal Science.

Nitrogen, an essential chemical element for life, is transformed into its different chemical forms in numerous steps of the global . Nitrite-oxidizing are important players in nitrogen cycling since they convert the toxic nitrite to the less harmful nitrate. "Humans exploit this process in biological wastewater treatment. Moreover, the formed nitrate is a substrate for other important microbial processes and a source of nitrogen for many plants" explains Hanna Koch, first author of the study and Ph.D. student at the Department of Microbiology and Ecosystem Science of the University of Vienna. Since the description of the first nitrite-oxidizing bacteria in the 19th century, scientists have assumed that the survival of these microorganisms would depend on nitrite as their source of energy. Therefore, the presence of nitrite-oxidizing bacteria in the environment and in has commonly been associated with the nitrogen cycle.

Nitrospira: Nitrite oxidizers with surprising features

The environmentally most widespread nitrite oxidizers belong to the genus Nitrospira. These bacteria occur in the most different habitats such as soil, rivers, lakes and oceans, and even in hot springs. In addition, Nitrospira are the key nitrite-oxidizing bacteria in wastewater treatment plants. A team of scientists from Austria, Denmark, Germany, and France has now revealed surprising facts about these microorganisms. "The genome analysis of a Nitrospira species indicated that this bacterium might use as an alternative source of energy" says Holger Daims from the Department of Microbiology and Ecosystem Science of the University of Vienna. The potential of Nitrospira to use hydrogen was then studied in detail.

Authors of the study from the University of Vienna. Back (from left to right): Christiane Gruber-Dorninger, Hanna Koch, Holger Daims. Front: Arno Schintlmeister, Michael Wagner. Credit: Allen Tsao, University of Vienna

NanoSIMS at the University of Vienna for high-resolution single-cell analyses

The hydrogen-dependent growth of Nitrospira could be visualized in individual bacterial cells by using the high-resolution secondary ion mass spectrometer, also called "NanoSIMS," at the University of Vienna. Under high vacuum conditions like in space, this method shoots small particles out of single bacterial cells for subsequent identification by mass spectrometry. "This exciting approach is feasible at very few research institutions worldwide," says Daims about this high-tech equipment. The scientists could show that Nitrospira cells, which use hydrogen as the source of energy, incorporate carbon dioxide into their biomass. This metabolic activity is linked to cell proliferation and was important evidence that the Nitrospira bacteria indeed use hydrogen for growth. These newly discovered features raise numerous questions about the lifestyle of the "free-living" close relatives of this Nitrospira species in the environment and wastewater .

Detection, by NanoSIMS, of hydrogen-dependent carbon dioxide fixation by single Nitrospira cells. The warmer the color, the more carbon dioxide was incorporated by the cells. Credit: Arno Schintlmeister, University of Vienna

New insights into the ecology of nitrite oxidizers

"The oxidation of hydrogen not only enables Nitrospira to colonize unexpected habitats, but also sustains their activity when nitrite is not available" explains Hanna Koch. Holger Daims adds: "This discovery was a great surprise to us. In the next step, we will explore how extensively environmental nitrite oxidizers use hydrogen as an energy source. Our goal is to better understand the ecology of these important bacteria and their significance for the global cycles of nitrogen and carbon."

Explore further: Nitrite's significant role in nitrous oxide emissions from soil

More information: "Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation": Hanna Koch, Alexander Galushko, Mads Albertsen, Arno Schintlmeister, Christiane Gruber-Dorninger, Sebastian Lücker, Eric Pelletier, Denis Le Paslier, Eva Spieck, Andreas Richter, Per H. Nielsen, Michael Wagner, and Holger Daims. In: Science, DOI: 10.1126/science.1256985

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