New silicon probe assists in disease diagnostics and drug discovery

Tissue staining is widely used in pathology to detect disease markers in a patient's sample. More specifically, a particular disease marker is bound with an antibody, which is then chemically colored or stained on the tissue. The intensity of the color classifies and determines the extent of a disease.

Tissue staining is a tedious process with many chemical steps analogous to developing photographs, whereby too much chemical solution or long exposures can overdevelop the sample or photo. In the context of pathology, this can cause false positives and negatives, which can lead to misdiagnosing a patient. According to a report issued by Johns Hopkins Hospital, of 6,171 biopsy slides sent since late 2008 for a second review, pathologists disagreed with the diagnosis on 86 of them.

Obtaining a biopsy is an invasive procedure for the patient, so small samples are taken whenever possible. Pathologists are determined to gain as much information as possible from these small samples, which can be only a few millimeters in length. Working at this scale requires staining to be done on many thin slices of the sample to identify and sub-type diseases, such as cancer, for treatment. Pathologists are often challenged in performing a sufficient number of important tests on these limited samples, critical for personalized treatment strategies.

"A key aspect of taking clinical samples is to ensure a high diagnostic capability while minimizing patient discomfort—the probe developed by IBM scientists does exactly that. The probe allows one to stain a very small section of a tissue with virtually any biomarker that may be clinically relevant. This capability allows the clinician to not only do more with a smaller sample, but will also allow for the use of multiple stains on the same sample, therefore increasing the accuracy of the diagnosis. Thus this work may be transformative for diagnosing a range of ailments ranging from cancer to cardiac disease," said Prof. Dr. Ali Khademhosseini, Associate Professor at Harvard-MIT's Division of Health Sciences and Technology.

To address these important challenges, IBM scientists in Zurich are reporting today in the peer-reviewed journal Lab on a Chip an innovative proof-of-concept technology called the microfluidic probe, which can accurately stain tissue sections at the micrometer scale.

The eight millimeter-wide, diamond-shaped probe consists of a silicon microfluidic head with two microchannels at each tip. Similar to an inkjet printer cartridge, the head injects the liquid on the surface, but then unlike a printer, it continuously aspirates the liquid to prevent spreading and accumulation on the surface, which can lead to overexposure.

Specifically for tissue section analysis, the probe can deliver an antibody very locally in a selected area of a tissue section with pinpoint accuracy. Since analysis can be done on spots and lines instead of on the entire tissue section, the tissue is better preserved for additional tests, if required. In addition, only a few picoliters (one trillionth of a liter) of liquid containing antibodies are needed for each analysis spot.

"We have developed a proof-of-concept technology, which I hope puts pathology on a modern roadmap—benefiting from the latest developments in silicon-based microfluidics," said Govind Kaigala, a scientist at IBM Research – Zurich. He adds, "This new approach will enable pathologists to stain tissue samples with micrometer precision and more easily perform multiple tissue stains on limited samples."

This research is based on IBM's decades of experience with silicon, which is now being applied to novel micro and nanotechnologies to solve today's greatest challenges ranging from energy production and consumption to healthcare.

The microfluidic probe fits to standard workflows in conventional pathology. In addition, it is compatible with current biochemical staining systems and is resistant to a broad range of typical chemicals. The small size of the probe also enables easy viewing of the sample from above and below by means of an inverted microscope commonly used in research and clinical laboratories.

Prof. Dr. Khademhosseini said, "The developed system may have great potential in applications where sample size and the need for testing various types of biological analysis are required. I am confident that one day such approach will enable us to take small tissue biopsies and be able to obtain significantly more information."

IBM scientists will continue to test and improve the probe and potentially begin using it in laboratory environments in the next several months. In addition, the team plans to explore specific clinical applications, possibly with partners in the field of pathology. The microfluidic probe promises to support the work of pathologists and become a tool of choice for pharmaceutical research and diagnostics involving biological specimens.

More information: Lab on a Chip, DOI:10.1039/C2LC21016A

Journal reference: Lab on a Chip

Provided by IBM